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    C. Titus Brown
    Associate Professor and Associate Researcher
    Population Health & Reproduction


    ctbrown@ucdavis.edu

       

    Research Focus

    Data Intensive Biology

    Education

    1997 B. A. Mathematics, Reed College, Portland, OR
    2007 Ph.D. Developmental Biology, California Institute of Technology, Pasadena, CA

    Active Research Grants

    Principal Investigator, The Genetics of Johne’s Disease, (Principal Investigator), USDA NIFA

    Principal Investigator, Data Driven Discovery Investigator Award, (Principal Investigator), Moore Foundation

    Co-Investigator, Cancer Center Support Grant P30, De Vere, Ralph (Principal Investigator), NIH

    Most Recent 10 Publications

    • C. Titus Brown: Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages 2016 Mansour TA, Rosenthal JJ, Brown CT, Roberson LM Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages Gigascience,
    • C. Titus Brown: How open science helps researchers succeed 2016 McKiernan EC, Bourne PE, Brown CT, Buck S, Kenall A, Lin J, McDougall D, Nosek BA, Ram K, Soderberg CK, Spies JR, Thaney K, Updegrove A, Woo KH, Yarkoni T How open science helps researchers succeed Elife,
    • C. Titus Brown: Haplotype-phased synthetic long reads from short-read sequencing 2016 Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA Haplotype-phased synthetic long reads from short-read sequencing PLoS One,
    • C. Titus Brown: Microbial community analysis with ribosomal gene fragments from shotgun metagenomes 2016 Guo J, Cole JR, Zhang Q, Brown CT, Tiedje JM Microbial community analysis with ribosomal gene fragments from shotgun metagenomes Appl Environ Microbiol,
    • C. Titus Brown: Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab 2016 Crusoe MR, Brown CT Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab Journal of open research software,
    • C. Titus Brown: Hsp90 and hepatobiliary transformation during sea lamprey metamorphosis 2015 Chung-Davidson YW, Yeh CY, Bussy U, Li K, Davidson PJ, Nanlohy KG, Brown CT, Whyard S, Li W Hsp90 and hepatobiliary transformation during sea lamprey metamorphosis BMC Dev Biol,
    • C. Titus Brown: The khmer software package: enabling efficient nucleotide sequence analysis 2015 Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, González I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT The khmer software package: enabling efficient nucleotide sequence analysis F1000Res,
    • C. Titus Brown: Differentially-Expressed Pseudogenes in HIV-1 Infection 2015 Gupta A, Brown CT, Zheng Y, Adami C Differentially-Expressed Pseudogenes in HIV-1 Infection Viruses,
    • C. Titus Brown: Xander: employing a novel method for efficient gene-targeted metagenomic assembly 2014 Wang Q, Fish JA, Gilman M, Sun Y, Brown CT, Tiedje JM, Cole JR Xander: employing a novel method for efficient gene-targeted metagenomic assembly Microbiome,
    • C. Titus Brown: Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships 2014 Lau MC, Cameron C, Magnabosco C, Brown CT, Schilkey F, Grim S, Hendrickson S, Pullin M, Sherwood Lollar B, van Heerden E, Kieft TL, Onstott TC Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships Front Microbiol,

    Most Recent 5 Book Chapters

    2014 Preevanon L, Pyrkosz AB, Brown CT: Chapter 7: Reproducible bioinformatics research for biologists, Stodden V, Leisch F, Peng RD, (ed), Implementing Reproducible Research. 185-206.

    External Links

    Data Intensive Biology Lab